Stem-loop gma-MIR5762

Accession

MI0019703

Description

Glycine max gma-MIR5762 precursor miRNA

Sequence

1538 reads, 16.0 reads per million, 149 experiments

uguuagaccaguCAGCUGAAUCCUCUUAUGAUCaagagcuguaaugcauaucaguuuuguuaucaguuugaaccguauuuucuuugaauuaccguaacagcccuucaUCAUAGGAGGAAUCAACUGGCuggucuaaca
(((((((((((((((.(((.((((((((((((.(((.((((((((((...((((..(((....))).))))...))))).................))))).))).)))))))))))).))).)))))))))))))))

Structure

               C   A            C   a     -----------------     aua    uu   u 
uguuagaccaguCAG UGA UCCUCUUAUGAU aag gcugu                 aaugc   ucag  uug u
||||||||||||||| ||| |||||||||||| ||| |||||                 |||||   ||||  |||  
acaaucugguCGGUC ACU AGGAGGAUACUa uuc cgaca                 uuaug   aguu  gac a
               A   A            c   c     augccauuaaguuucuu     cca    -u   u 

Annotation confidence High

Genome context

chr12: 653862-653999 [+]

Mature gma-miR5762-5p

• Accession: MIMAT0054280
• Description: Glycine max gma-miR5762-5p mature miRNA
• Sequence: 13 - CAGCUGAAUCCUCUUAUGAUC - 33
• Evidence: experimental ; unknown

Mature gma-miR5762-3p

• Accession: MIMAT0023158
• Description: Glycine max gma-miR5762-3p mature miRNA
• Sequence: 108 - UCAUAGGAGGAAUCAACUGGC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553