Stem-loop gma-MIR5764

Accession

MI0019706

Description

Glycine max gma-MIR5764 precursor miRNA

Sequence

3030 reads, 19.0 reads per million, 156 experiments

ucacagcacaaccaguauucuuguccgcggaaggaccacccccgacggccaaagaaagaaggaaacucgauCUCCUCGAGGAGAGAUUGAGgguuguuuaaggcuuuggugacuaUCCAUUCGCGGACAUGAUGGAUcuuugcuugg
.((.((((...(((....((.((((((((((.(((............(((((((...(((.((..(((((((((((...)).)))))))))..)).)))....))))))).....))).)))))))))).))))).....)))))).

Structure

u  c    --caa   guau  u          a   ccacccccgacg       -aaa   g  aa         -  C 
 ca agca     cca    uc uguccgcgga gga            gccaaag    gaa ga  cucgauCUC CU  
 || ||||     |||    || |||||||||| |||            |||||||    ||| ||  ||||||||| || G
 gu ucgu     GGU    AG ACAGGCGCUU CCU            ugguuuc    uuu uu  GAGUUAGAG GG  
g  -    uucUA   ----  U          A   -------aucag       ggaa   g  gg         A  A 

Annotation confidence Low

Genome context

chr14: 33216347-33216493 [+]

Mature gma-miR5764-5p

• Accession: MIMAT0054283
• Description: Glycine max gma-miR5764-5p mature miRNA
• Sequence: 72 - CUCCUCGAGGAGAGAUUGAG - 91
• Evidence: experimental ; unknown

Mature gma-miR5764-3p

• Accession: MIMAT0023161
• Description: Glycine max gma-miR5764-3p mature miRNA
• Sequence: 116 - UCCAUUCGCGGACAUGAUGGAU - 137
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553