miRBase entry: gma-MIR5766

Stem-loop gma-MIR5766


Accession
MI0019708
Description
Glycine max gma-MIR5766 precursor miRNA


Sequence

1217 reads, 80.0 reads per million, 138 experiments
uguuccuuuucuugcuucuacucacccccaugaccauuaguuuauacuuaguccaaguuguacuuuauuuugcuguggaagaagaauaagaccaagguuuuaaUUAGAGCCUCGUUUGUGCAAGUGaaaaauaggaucacauugaccuauucuuuuuucaagcucuuuuaauugucuugggaagaaaaugaacccagaaaugaauggggUUGAGGCUGAGAAGAGGCAAGagaauggaca
(((((.(((((((((((((.((((...((.(((((....((((((......((((((..............(((.(((((((((((((((((..(((((((....))))))).))))((.(((((((.........)))).))))).))))))))))))))))............))))))......))))))(((........)))))))).)).)))).))))))))))))).)))))

Structure
     c             a    ccc  a     ----------auua      acuuag      uuguacuuuauuuu   g             ------------------------------    ca       a 
uguuc uuuucuugcuucu cuca   cc ugacc              guuuau      uccaag              gcu uggaagaagaaua                              agac  agguuuu a
||||| ||||||||||||| ||||   || |||||              ||||||      ||||||              ||| |||||||||||||                              ||||  |||||||  
acagg aagaGAACGGAGA GAGU   GG GUUgg              caagua      ggguuc              cga acuuuuuucuuau                              UUUG  UCCGAGA U
     u             A    --C  A     gguaaguaaagacc      aaagaa      --uguuaauuuucu   -             ccaguuacacuaggauaaaaaGUGAACGUG    -C       U 


Annotation confidence Not enough data
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Genome context
chr16: 2063448-2063687 [-]

Database links

Mature gma-miR5766-5p

Accession MIMAT0054284
Description Glycine max gma-miR5766-5p mature miRNA
Sequence 104 - UUAGAGCCUCGUUUGUGCAAGUG - 126
Evidence experimental
unknown

Mature gma-miR5766-3p

Accession MIMAT0023163
Description Glycine max gma-miR5766-3p mature miRNA
Sequence 210 - UUGAGGCUGAGAAGAGGCAAG - 230
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553