Stem-loop gma-MIR5767

Accession

MI0019709

Description

Glycine max gma-MIR5767 precursor miRNA

Literature search

1 open access papers mention gma-MIR5767
(1 sentences)

Sequence

469902 reads, 2089.0 reads per million, 177 experiments

ugggugcucuUGGAGGACCUUUGAAGGUGCAauuugauacacaaaucggacaccauuaaacUCACCAUUAAGACAGAGACCUUGuaguguugacacaagggaacagauccu
.((((..((((((.((...(((((.(((((.(((((.....)))))..).)))).)))))....)).))))))......((((((.((....))))))))......)))).

Structure

u    -------------------------------gc      A  -ACC     A    - -A     a 
 gggu                                 ucuUGG GG    UUUGA GGUG C  auuug u
 ||||                                 |||||| ||    ||||| |||| |  ||||| a
 ccua                                 AGAAUU CC    aaauu ccac g  uaaac c
u    gacaagggaacacaguugugauGUUCCAGAGAC      A  ACUc     a    a gc     a 

Annotation confidence Low

Genome context

chr16: 30784546-30784656 [-]

Mature gma-miR5767-5p

• Accession: MIMAT0023164
• Description: Glycine max gma-miR5767-5p mature miRNA
• Sequence: 11 - UGGAGGACCUUUGAAGGUGCA - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR5767-3p

• Accession: MIMAT0054285
• Description: Glycine max gma-miR5767-3p mature miRNA
• Sequence: 62 - UCACCAUUAAGACAGAGACCUUG - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553