Stem-loop gma-MIR5559

Accession

MI0019713

Description

Glycine max gma-MIR5559 precursor miRNA

Literature search

2 open access papers mention gma-MIR5559
(3 sentences)

Sequence

343193 reads, 425.0 reads per million, 174 experiments

uauuuccuuuUACUUGGUGAAUUGUUGGAUCacucugugucaaccaaccauauuggauuuggagcuucaugcagaagacaaaagagaugcaagccagaggaaauauagaaugauccaaCAUUUCACUAUGUAAAAGGAUUGC
....(((((((((.(((((((.((((((((((.(((((((...((.......(((.((((....((((.....)))).......)))).)))......))..))))))).)))))))))).))))))).)))))))))....

Structure

uauu         U       U          c       caa  aaccaua   g    ---ggag    a 
    uccuuuUAC UGGUGAA UGUUGGAUCa ucugugu   cc       uug auuu       cuuc u
    ||||||||| ||||||| |||||||||| |||||||   ||       ||| ||||       |||| g
    AGGAAAAUG AUCACUU ACaaccuagu agauaua   gg       aac uaga       gaag c
CGUU         U       U          a       -aa  -agaccg   g    gaaaaca    a 

Annotation confidence Low

Genome context

chr19: 776239-776380 [+]

Mature gma-miR5559-5p

• Accession: MIMAT0023168
• Description: Glycine max gma-miR5559-5p mature miRNA
• Sequence: 11 - UACUUGGUGAAUUGUUGGAUC - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR5559-3p

• Accession: MIMAT0054289
• Description: Glycine max gma-miR5559-3p mature miRNA
• Sequence: 119 - CAUUUCACUAUGUAAAAGGAUUGC - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553