Stem-loop gma-MIR5225

Accession

MI0019714

Description

Glycine max gma-MIR5225 precursor miRNA

Sequence

11528 reads, 43.0 reads per million, 136 experiments

uuuagggacuCCUGUCGUAGGAGAGAUGACGCcuucuguuagguaauuaauauguugcaaagccaacuugaauuagcaguagcuGUCAUCUUUCCUCGGCUGAAGccccuuca
...((((.((.(.((((.(((((((((((((.((.((((((((((((......)))))..............))))))).)).))))))))))))))))).).)).))))...

Structure

uuu    a  C U    U             C  u       --------------     ua 
   aggg cu C GUCG AGGAGAGAUGACG cu cuguuag              guaau  a
   |||| || | |||| ||||||||||||| || |||||||              |||||   
   uccc GA G CGGC UCCUUUCUACUGu ga gacgauu              cguug  u
acu    c  A U    -             c  u       aaguucaaccgaaa     ua 

Annotation confidence High

Genome context

chr19: 1966719-1966831 [+]

Mature gma-miR5225-5p

• Accession: MIMAT0023169
• Description: Glycine max gma-miR5225-5p mature miRNA
• Sequence: 11 - CCUGUCGUAGGAGAGAUGACGC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR5225-3p

• Accession: MIMAT0054290
• Description: Glycine max gma-miR5225-3p mature miRNA
• Sequence: 85 - GUCAUCUUUCCUCGGCUGAAG - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553