Stem-loop gma-MIR5773

Accession

MI0019720

Description

Glycine max gma-MIR5773 precursor miRNA

Sequence

1570 reads, 30.0 reads per million, 170 experiments

gauuuucuuaUUUUUAAAAGGUUCAGUUAGGUccuuuauuuuuuaaaauggguucaauuuggucccacuuaaacucauuuuuugaaaauguucgaagcuguuggaagaaaaugggaccaacccaauuuaaaaaaUAAAAGACCUAAUUGAACCUUUuaaaaauaaagggacca
...((((((((((((((((((((((((((((((.(((((((((((((.(((((......(((((((((((.(((.....(((((((....)))))))..)))..)))....))))))))))))).))))))))))))).)))))))))))))))))))))))).))))))...

Structure

gau      -                        c             a     ucaauu        ----   -a   ucauu       a 
   uuucuu aUUUUUAAAAGGUUCAGUUAGGUc uuuauuuuuuaaa ugggu      ugguccca    cuu  aac     uuuugaa a
   |||||| |||||||||||||||||||||||| ||||||||||||| |||||      ||||||||    |||  |||     |||||||  
   agggaa uaaaaauUUUCCAAGUUAAUCCAG AAAUaaaaaauuu accca      accagggu    gaa  uug     gaagcuu u
acc      a                        A             a     ------        aaaa   gg   ---uc       g 

Annotation confidence Medium

Genome context

chr3: 44861560-44861732 [+]

Mature gma-miR5773-5p

• Accession: MIMAT0023175
• Description: Glycine max gma-miR5773-5p mature miRNA
• Sequence: 11 - UUUUUAAAAGGUUCAGUUAGGU - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR5773-3p

• Accession: MIMAT0054295
• Description: Glycine max gma-miR5773-3p mature miRNA
• Sequence: 135 - UAAAAGACCUAAUUGAACCUUU - 156
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553