Stem-loop gma-MIR1516c

Accession

MI0019723

Description

Glycine max gma-MIR1516c precursor miRNA

Literature search

1 open access papers mention gma-MIR1516c
(1 sentences)

Sequence

701 reads, 8.0 reads per million, 139 experiments

ugaucauggcAAUGUCUGGGCUUAGCGAGGCGGUcacgagcuuagcgugcuuuuggguuucuucauggucCUUCUUCGUGCUAAGCUUGAGCUUgccugcuaagcgaggaggugcguugagcc
...(((..(((.(.(((..(((((((.((((((.(.(((((((((((((.....(((..((.....)).)))....))))))))))))).).)))))))))))))..))).))))..)))...

Structure

uga   ug   A G   GG       G      U a             cuuuu   uu  u 
   uca  gcA U UCU  GCUUAGC AGGCGG c cgagcuuagcgug     ggg  uc u
   |||  ||| | |||  ||||||| |||||| | |||||||||||||     |||  || c
   agu  cgu g agg  cgaaucg uccgUU G GUUCGAAUCGUGC     UCc  gg a
ccg   ug   - g   ag       -      C A             -UUCU   -u  u 

Annotation confidence Medium

Genome context

chr4: 40141067-40141189 [+]

Mature gma-miR1516c-5p

• Accession: MIMAT0023178
• Description: Glycine max gma-miR1516c-5p mature miRNA
• Sequence: 11 - AAUGUCUGGGCUUAGCGAGGCGGU - 34
• Evidence: experimental ; Illumina [1]

Mature gma-miR1516c-3p

• Accession: MIMAT0054298
• Description: Glycine max gma-miR1516c-3p mature miRNA
• Sequence: 71 - CUUCUUCGUGCUAAGCUUGAGCUU - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553