Stem-loop gma-MIR5776

Accession

MI0019726

Description

Glycine max gma-MIR5776 precursor miRNA

Sequence

guggauuguuAACUUGGGCUGAGCUUAGGUGaguguugaccguggugugcucuaagcaaaccuagauucaaggucuuuggaguucagcuuacccucuggcaagguugagacaccaugggggauggguguguaccugcaaaaaagacacucagacucucagucauuaaggaaucuaccagcgucaauauagaaucccggucaacacccaccggaguucaauucaagucaauaguucacc
((((((((((.(((((((.(((((((.((((.((((((((((((((((((((((((...((((.......)))).))))))))(((((((..((...))..))))))).))))))((((((.(((((((...............)))))))..))))))........(((.((((............)))).))))))))))))).)))).))))))).))))))).)))))))))).

Structure

-          A       C       A    a          uggugugcucuaagcaaaccuagauucaaggucuuuggaguucagcuuacccucuggcaagguugagacacca      -a       guaccu 
 guggauuguu ACUUGGG UGAGCUU GGUG guguugaccg                                                                         uggggg  ugggugu      g
 |||||||||| ||||||| ||||||| |||| ||||||||||                                                                         ||||||  |||||||      c
 cacuugauaa ugaacuu acuugag ccac cacaacuggc                                                                         acucuc  acucaca      a
c          c       a       g    c          -------------------------------------ccuaagauauaacugcgaccaucuaaggaauuacug      ag       gaaaaa 

Annotation confidence Not enough data

Genome context

chr5: 3506706-3506943 [-]

Mature gma-miR5776

• Accession: MIMAT0023181
• Description: Glycine max gma-miR5776 mature miRNA
• Sequence: 11 - AACUUGGGCUGAGCUUAGGUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553