miRBase entry: gma-MIR5776

Stem-loop gma-MIR5776


Accession
MI0019726
Description
Glycine max gma-MIR5776 precursor miRNA


Sequence

13223 reads, 122.0 reads per million, 178 experiments
guggauuguuAACUUGGGCUGAGCUUAGGUGaguguugaccguggugugcucuaagcaaaccuagauucaaggucuuuggaguucagcuuacccucuggcaagguugagacaccaugggggauggguguguaccugcaaaaaagacacucagacucucagucauuaaggaaucuaccagcgucaauauagaaucccggucaacacccaCCGGAGUUCAAUUCAAGUCAAuaguucacc
((((((((((.(((((((.(((((((.((((.((((((((((((((((((((((((...((((.......)))).))))))))(((((((..((...))..))))))).))))))((((((.(((((((...............)))))))..))))))........(((.((((............)))).))))))))))))).)))).))))))).))))))).)))))))))).

Structure
-          A       C       A    a          uggugugcucuaagcaaaccuagauucaaggucuuuggaguucagcuuacccucuggcaagguugagacacca      -a       guaccu 
 guggauuguu ACUUGGG UGAGCUU GGUG guguugaccg                                                                         uggggg  ugggugu      g
 |||||||||| ||||||| ||||||| |||| ||||||||||                                                                         ||||||  |||||||      c
 cacuugauAA UGAACUU ACUUGAG CCac cacaacuggc                                                                         acucuc  acucaca      a
c          C       A       G    c          -------------------------------------ccuaagauauaacugcgaccaucuaaggaauuacug      ag       gaaaaa 


Annotation confidence High
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Genome context
chr5: 3506706-3506943 [-]

Database links

Mature gma-miR5776-5p

Accession MIMAT0023181
Description Glycine max gma-miR5776-5p mature miRNA
Sequence 11 - AACUUGGGCUGAGCUUAGGUG - 31
Evidence experimental
Illumina [1]

Mature gma-miR5776-3p

Accession MIMAT0054299
Description Glycine max gma-miR5776-3p mature miRNA
Sequence 209 - CCGGAGUUCAAUUCAAGUCAA - 229
Evidence experimental
unknown

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553