Stem-loop gma-MIR5778

Accession

MI0019728

Description

Glycine max gma-MIR5778 precursor miRNA

Sequence

3019 reads, 76.0 reads per million, 172 experiments

gcaucaacuuCGACGAACUCUUCGUCGGCAUCgacauccacggagaugucuugccggacuuggagauguucggcgaguucuccguggaugucagcaccggCGAGGAAUCGUCGGAGAUGAACU
...(((.(((((((((..((((((((((....((((((((((((((...((((((((((........)))))))))).))))))))))))))....)))))))))).))))))))).)))...

Structure

gca   a         AC          CAUC              ugu          uug 
   uca cuuCGACGA  UCUUCGUCGG    gacauccacggaga   cuugccggac   g
   ||| |||||||||  ||||||||||    ||||||||||||||   ||||||||||    
   AGU GAGGCUGCU  AGGAGCggcc    cuguaggugccucu   gagcggcuug   a
UCA   A         -A          acga              --u          uag 

Annotation confidence Low

Genome context

chr6: 47797818-47797940 [+]

Mature gma-miR5778-5p

• Accession: MIMAT0023183
• Description: Glycine max gma-miR5778-5p mature miRNA
• Sequence: 11 - CGACGAACUCUUCGUCGGCAUC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR5778-3p

• Accession: MIMAT0054301
• Description: Glycine max gma-miR5778-3p mature miRNA
• Sequence: 101 - CGAGGAAUCGUCGGAGAUGAACU - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553