Stem-loop gma-MIR5780a

Accession

MI0019730

Description

Glycine max gma-MIR5780a precursor miRNA

Sequence

4774 reads, 28.0 reads per million, 177 experiments

uuuuggucuggguuccuauugucaagUUAAGUGAUGACAUGACAucaucugaugacugauauauauuggaagagccguugagaugaugucacaucAUCACUUAGCUGACGGUAGGGACcuaggacaaa
.((((..(((((((((((((((((.((((((((((((..(((((((((((((((.((...............)).)))).)))))))))))..)))))))))))))))))))))))))))))..))))

Structure

u    gu                 a            CA           -    a  gauaua 
 uuug  cuggguuccuauuguca gUUAAGUGAUGA  UGACAucaucu gaug cu      u
 ||||  ||||||||||||||||| ||||||||||||  ||||||||||| |||| ||      a
 aaac  gaucCAGGGAUGGCAGU CGAUUCACUAcu  acuguaguaga uugc ga      u
-    ag                 -            ac           g    c  gaaggu 

Annotation confidence Low

Genome context

chr6: 29583605-29583732 [-]

Mature gma-miR5780a-5p

• Accession: MIMAT0054303
• Description: Glycine max gma-miR5780a-5p mature miRNA
• Sequence: 27 - UUAAGUGAUGACAUGACA - 44
• Evidence: experimental ; unknown

Mature gma-miR5780a-3p

• Accession: MIMAT0023185
• Description: Glycine max gma-miR5780a-3p mature miRNA
• Sequence: 96 - AUCACUUAGCUGACGGUAGGGAC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553