Stem-loop gma-MIR5781

Accession

MI0019731

Description

Glycine max gma-MIR5781 precursor miRNA

Literature search

1 open access papers mention gma-MIR5781
(1 sentences)

Sequence

18801 reads, 49.0 reads per million, 167 experiments

ccaacuucaggcucaggaggcagugugaguucuugugAUUGCAUCUGCGACUGAAACUGAGACUGCAUCUGGaugaaggaua
....(((((...(((((..(((((.(.((((.(((.(.((((....)))))))))))).).))))).))))).)))))....

Structure

ccaa     ggc     ag     g g    c   u A    A 
    cuuca   ucagg  gcagu u aguu uug g UUGC U
    |||||   |||||  ||||| | |||| ||| | ||||  
    gaagu   GGUCU  CGUCA A UCAA AGU C AGCG C
auag     --a     -A     G G    -   - -    U 

Annotation confidence Medium

Genome context

chr6: 36774683-36774764 [-]

Mature gma-miR5781-5p

• Accession: MIMAT0054304
• Description: Glycine max gma-miR5781-5p mature miRNA
• Sequence: 38 - AUUGCAUCUGCGACUGAA - 55
• Evidence: experimental ; unknown

Mature gma-miR5781-3p

• Accession: MIMAT0023186
• Description: Glycine max gma-miR5781-3p mature miRNA
• Sequence: 51 - CUGAAACUGAGACUGCAUCUGG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553