Stem-loop gma-MIR5782

Accession

MI0019732

Description

Glycine max gma-MIR5782 precursor miRNA

Sequence

1841 reads, 43.0 reads per million, 172 experiments

GGUAAAUUGAAUUGAACUUCUCcuauaaguuaaaaucaacuuauacacauaauuuucguagaaacucuauccuauagcuucuucaaaagcugaaguguguaaccugauuuUAGCUGGUAGGAGAAGUUCAGuucauuuuac
.(((((.(((((((((((((((((((.(((((((((((..((((((((.........(((((...)))))....((((((......))))))..))))))))..))))))))))).))))))))))))))))))).)))))

Structure

G     U                   a           ac        auaauuuucguagaaacucuauccua      cu 
 GUAAA UGAAUUGAACUUCUCcuau aguuaaaauca  uuauacac                          uagcuu  u
 ||||| ||||||||||||||||||| |||||||||||  ||||||||                          ||||||   
 cauuu acuuGACUUGAAGAGGAUG UCGAUuuuagu  aaugugug                          gucgaa  c
-     u                   G           cc        ------------------------aa      aa 

Annotation confidence Low

Genome context

chr7: 12611603-12611743 [-]

Mature gma-miR5782-5p

• Accession: MIMAT0054305
• Description: Glycine max gma-miR5782-5p mature miRNA
• Sequence: 1 - GGUAAAUUGAAUUGAACUUCUC - 22
• Evidence: experimental ; unknown

Mature gma-miR5782-3p

• Accession: MIMAT0023187
• Description: Glycine max gma-miR5782-3p mature miRNA
• Sequence: 111 - UAGCUGGUAGGAGAAGUUCAG - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553