Stem-loop gma-MIR5783

Accession

MI0019733

Description

Glycine max gma-MIR5783 precursor miRNA

Sequence

625 reads, 33.0 reads per million, 131 experiments

ggccgcgguggcGGGUCCCUCCGGGUCGUCUCCgucugcggaggacgacggaGACGACGACGGGGAGGACGCGCcgcugcugca
.((.(((((((((.(((((((((.((((((((((((..(....)..))))))))))))..))))).)))).))))))))).)).

Structure

g  c         G    -     -G            ug g 
 gc gcgguggcG GUCC CUCCG  GUCGUCUCCguc  c g
 || ||||||||| |||| |||||  ||||||||||||  |  
 cg cgucgcCGC CAGG GGGGC  CAGCAGaggcag  g a
a  u         G    A     AG            ca g 

Annotation confidence Medium

Genome context

chr7: 41030514-41030597 [+]

Mature gma-miR5783-5p

• Accession: MIMAT0054306
• Description: Glycine max gma-miR5783-5p mature miRNA
• Sequence: 13 - GGGUCCCUCCGGGUCGUCUCC - 33
• Evidence: experimental ; unknown

Mature gma-miR5783-3p

• Accession: MIMAT0023188
• Description: Glycine max gma-miR5783-3p mature miRNA
• Sequence: 53 - GACGACGACGGGGAGGACGCGC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553