Stem-loop gma-MIR5770b

Accession

MI0019734

Description

Glycine max gma-MIR5770b precursor miRNA

Literature search

2 open access papers mention gma-MIR5770b
(2 sentences)

Sequence

4798888 reads, 6068.0 reads per million, 178 experiments

ggauauuucuUUAGGACUAUGGUUUGGACAAgucacuacucagagcacaaaacaugcuaauuaauuugugugcacuggaauguucucuaccuaucuaucgugagcuauauaucucuuugguuauguucucauaacuucuguuuuugcaaguaaucuugaccagcuucuaguccaaaauccugcagagguugauaacacauuguagugacagaagaguucaguugccacuUGUCCAAUCCAUAGUUUUAAaggaaugaaccc
((.(((((((((((((((((((.((((((((((..(.(((.((((.(((...(((((..((......))..))).))...))).))))...........(((((..(((((.((....)).))))).)))))..((((((((.((((((...........((((((((.((..........))))))))))........)))))).)))))))).....))).)..)))))))))).)))))))))))))))))))..)).

Structure

-  -a                   U          ca u   cagagcacaaaacaugcuaauuaauuugugugcacuggaauguucucuaccuaucuaucgugagcuauauaucucuuugguuauguucucauaa        u      guaaucuugac        a  ccaa 
 gg  uauuucuUUAGGACUAUGG UUGGACAAgu  c acu                                                                                              cuucuguu uugcaa           cagcuucu gu    a
 ||  ||||||||||||||||||| ||||||||||  | |||                                                                                              |||||||| ||||||           |||||||| ||     
 cc  guaaggaAAUUUUGAUACC AACCUGUuca  g uga                                                                                              gaagacag gauguu           guuggaga cg    a
c  aa                   U          cc u   -----------------------------------------------------------------------------------------cuuga        u      ---acacaaua        -  uccu 

Annotation confidence High

Genome context

chr7: 16812503-16812763 [-]

Mature gma-miR5770b-5p

• Accession: MIMAT0023189
• Description: Glycine max gma-miR5770b-5p mature miRNA
• Sequence: 11 - UUAGGACUAUGGUUUGGACAA - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR5770b-3p

• Accession: MIMAT0054307
• Description: Glycine max gma-miR5770b-3p mature miRNA
• Sequence: 230 - UGUCCAAUCCAUAGUUUUAA - 249
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553