Stem-loop gma-MIR5784

Accession

MI0019735

Description

Glycine max gma-MIR5784 precursor miRNA

Sequence

1697 reads, 14.0 reads per million, 159 experiments

aaacucuucauUAGCUAAUCAUUAGCUAAUUUGuaaaugucaucucauuuuuuagaaaagcuuuaugagagcuucuacuAAUUAGCUAAUGGUUAGCUAAugaagaacuc
....(((((((((((((((((((((((((((.(((...((..((((((................))))))))...))).)))))))))))))))))))))))))))....

Structure

aaac                           U   aau  ca      uuuuuag 
    ucuucauUAGCUAAUCAUUAGCUAAUU Gua   gu  ucucau       a
    ||||||||||||||||||||||||||| |||   ||  ||||||        
    agaaguAAUCGAUUGGUAAUCGAUUAA cau   cg  agagua       a
cuca                           u   cuu  --      uuucgaa 

Annotation confidence High

Genome context

chr8: 30764439-30764548 [+]

Mature gma-miR5784-5p

• Accession: MIMAT0054308
• Description: Glycine max gma-miR5784-5p mature miRNA
• Sequence: 12 - UAGCUAAUCAUUAGCUAAUUUG - 33
• Evidence: experimental ; unknown

Mature gma-miR5784-3p

• Accession: MIMAT0023190
• Description: Glycine max gma-miR5784-3p mature miRNA
• Sequence: 80 - AAUUAGCUAAUGGUUAGCUAA - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553