miRBase entry: gma-MIR5785

Stem-loop gma-MIR5785


Accession
MI0019736
Description
Glycine max gma-MIR5785 precursor miRNA


Sequence

5278 reads, 28.0 reads per million, 167 experiments
auuuacuuguUAGUGUUGUCCUGUCGAACACGGAcaccaacaugugucagacaccagacacgaacaaaagaaugGAGUGUACGUGAUUGAUAGGUUCUcacuucuguagaauaucuauuuuuacuuucaugcaacguggaua
((((((((((.((((....((((((((.((((.((((...((((((((........)))))..........)))..)))).)))).))))))))....))))...((((((.......))))))......)))).)))))).

Structure
-      -    ---------------------------U    UUGU        A    G    caa   ----------     aga 
 auuuac uugu                            AGUG    CCUGUCGA CACG Acac   cau          guguc   c
 |||||| ||||                            ||||    |||||||| |||| ||||   |||          |||||    
 uaggug aacg                            ucac    GGAUAGUU GUGC UGUG   gua          cacag   a
a      c    uacuuucauuuuuaucuauaagaugucu    UCUU        A    A    -AG   agaaaacaag     acc 


Annotation confidence Low
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Genome context
chr8: 45205542-45205683 [-]

Database links

Mature gma-miR5785-5p

Accession MIMAT0023191
Description Glycine max gma-miR5785-5p mature miRNA
Sequence 11 - UAGUGUUGUCCUGUCGAACACGGA - 34
Evidence experimental
Illumina [1]

Mature gma-miR5785-3p

Accession MIMAT0054309
Description Glycine max gma-miR5785-3p mature miRNA
Sequence 75 - GAGUGUACGUGAUUGAUAGGUUCU - 98
Evidence experimental
unknown

References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553