Stem-loop gma-MIR5774b

Accession

MI0019738

Description

Glycine max gma-MIR5774b precursor miRNA

Literature search

1 open access papers mention gma-MIR5774b
(2 sentences)

Sequence

2782 reads, 12.0 reads per million, 152 experiments

aagaguuuggGCUGGCGUCGACACGUGGCAUgagacuagucaguggcaauuugcagguagcagggcuucucagcuuuuucaggguagcaggguuacugcaaaucgccaauuggacuggcuagucucAUGUCACGUGUCGACGUCAGCCcaaacucgu
..(((((((((((((((((((((((((((((((((((((((((((((.((((((((.((((...(((.(((..........))).)))...)))))))))))).)))......))))))))))))))))))))))))))))))))))))))))))..

Structure

aa                                          ------   a        g    agg   u   agcu 
  gaguuuggGCUGGCGUCGACACGUGGCAUgagacuagucagu      ggc auuugcag uagc   gcu cuc    u
  ||||||||||||||||||||||||||||||||||||||||||      ||| |||||||| ||||   ||| |||     
  cucaaacCCGACUGCAGCUGUGCACUGUAcucugaucgguca      ccg uaaacguc auug   cga ggg    u
ug                                          gguuaa   c        -    gga   u   acuu 

Annotation confidence Medium

Genome context

chr9: 49753426-49753582 [-]

Mature gma-miR5774b-5p

• Accession: MIMAT0023193
• Description: Glycine max gma-miR5774b-5p mature miRNA
• Sequence: 11 - GCUGGCGUCGACACGUGGCAU - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR5774b-3p

• Accession: MIMAT0054310
• Description: Glycine max gma-miR5774b-3p mature miRNA
• Sequence: 127 - AUGUCACGUGUCGACGUCAGCC - 148
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553