Stem-loop gma-MIR399a

Accession

MI0019739

Description

Glycine max gma-MIR399a precursor miRNA

Literature search

16 open access papers mention gma-MIR399a
(118 sentences)

Sequence

90562 reads, 232.0 reads per million, 174 experiments

aaaacagcuauaGGGCUUCUCUUUAUUGGCAGgaaauuaucaugaccacuucaucagauaucuUGCCAAAGGAGAGUUGCCCUGuugcuacuuu
.....(((.(((((((..((((((.(((((((((...((((.(((........)))))))))))))))).))))))..))))))).))).....

Structure

aaaac   u       UU      A         aau    a   cca 
     agc auaGGGC  CUCUUU UUGGCAGga   uauc uga   c
     ||| |||||||  |||||| |||||||||   |||| |||    
     ucg uGUCCCG  GAGAGG AACCGUucu   auag acu   u
uuuca   u       UU      A         ---    -   acu 

Annotation confidence High

Genome context

chr10: 46844955-46845048 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399a

Mature gma-miR399a-5p

• Accession: MIMAT0054311
• Description: Glycine max gma-miR399a-5p mature miRNA
• Sequence: 13 - GGGCUUCUCUUUAUUGGCAG - 32
• Evidence: experimental ; unknown

Mature gma-miR399a-3p

• Accession: MIMAT0023194
• Description: Glycine max gma-miR399a-3p mature miRNA
• Sequence: 64 - UGCCAAAGGAGAGUUGCCCUG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553