Stem-loop gma-MIR530c

Accession

MI0019742

Description

Glycine max gma-MIR530c precursor miRNA

Literature search

3 open access papers mention gma-MIR530c
(4 sentences)

Sequence

uucguuccaauaugcugccuuugccUGCAUUUGCACCUGCACUUUAcuugguuuucucuguucaacuacuaagacguacuaccacaaaagcaugucaauggagaaggaauaaaaagauuacguaguaugugugugaauuaauggacgagaaaccaagcacgaggugcaggugcaucugcaggugaaugacaucuuggcuuauauaua
......((((.(((...(.((((((((((..((((((((((((((.((((((((.(((.(((((....(..(.(((((((((........(((....))).....................))))))))).)..)......))))))))))))))))...))))))))))))))..)))))))))).).))).))))..........

Structure

----uucguu    u   cug c          UU              --A        u   u     --acua ua g         -------------cacaaaag   g 
          ccaa aug   c uuugccUGCA  UGCACCUGCACUUU   cuugguuu cuc guuca      c  a acguacuac                     cau u
          |||| |||   | ||||||||||  ||||||||||||||   |||||||| ||| |||||      |  | |||||||||                     |||  
          gguu uac   g aaguggacgu  acguggacguggag   gaaccaaa gag caggu      g  u uguaugaug                     gua c
auauauauuc    c   --a u          cu              cac        -   -     aauuaa ug g         cauuagaaaaauaaggaagag   a 

Annotation confidence Not enough data

Genome context

chr11: 26804548-26804754 [-]

Mature gma-miR530c

• Accession: MIMAT0023197
• Description: Glycine max gma-miR530c mature miRNA
• Sequence: 26 - UGCAUUUGCACCUGCACUUUA - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553