Stem-loop gma-MIR530d

Accession

MI0019744

Description

Glycine max gma-MIR530d precursor miRNA

Literature search

2 open access papers mention gma-MIR530d
(3 sentences)

Sequence

67078 reads, 649.0 reads per million, 160 experiments

uucguuccaauaugcugccuuugccUGCAUUUGCACCUGCACUUUAcuugguuuucucuguucaacaacuuagacguacgucuuaguugccacaaaagcaugucaaugaagaaggaaagagauuacauaauaugugugggaauuaauggacgagaaaccaagcacgAGGUGCAGGUGCAUCUGCAGGUgaaugacaucuuggcuaaauauau
......((((.(((...(.((((((((((..((((((((((((((.((((((((.(((.(((((.(((((.((((....)))).)))))(((((.....((((.(((..............)))))))......))))).......))))))))))))))))...))))))))))))))..)))))))))).).))).))))..........

Structure

----uucguu    u   cug c          UU              --A        u   u     acaacuuagacguacgucuuaguug     -aaagc    c   gaagaa 
          ccaa aug   c uuugccUGCA  UGCACCUGCACUUU   cuugguuu cuc guuca                         ccaca      augu aau      g
          |||| |||   | ||||||||||  ||||||||||||||   |||||||| ||| |||||                         |||||      |||| |||       
          gguu uac   g aagUGGACGU  ACGUGGACGUGGAg   gaaccaaa gag caggu                         ggugu      uaca uua      g
uauauaaauc    c   --a u          CU              cac        -   -     ------------------aauuaag     guauaa    -   gagaaa 

Annotation confidence High

Genome context

chr12: 6225432-6225643 [+]

Mature gma-miR530d-5p

• Accession: MIMAT0023199
• Description: Glycine max gma-miR530d-5p mature miRNA
• Sequence: 26 - UGCAUUUGCACCUGCACUUUA - 46
• Evidence: experimental ; Illumina [1]

Mature gma-miR530d-3p

• Accession: MIMAT0054316
• Description: Glycine max gma-miR530d-3p mature miRNA
• Sequence: 167 - AGGUGCAGGUGCAUCUGCAGGU - 188
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553