Stem-loop gma-MIR171m

Accession

MI0019745

Description

Glycine max gma-MIR171m precursor miRNA

Literature search

15 open access papers mention gma-MIR171m
(36 sentences)

Sequence

104602 reads, 690.0 reads per million, 178 experiments

gaaguguuguaugaagcacaaaucaAGGUAUUGGCGUGCCUCAAUUugaagacaugguuaagaugaaaaccagccauguaauuuuaaUUGAGCCGCGUCAAUAUCUCAucuugcacuucuuuccaucuucauc
(((((((...((((............((((((((((((.(((((((.(((.((((((((............))))))))..))).))))))).))))))))))))))))...)))))))..............

Structure

--------------       ugu    agcacaaaucaA            C       u   -g        aagau 
              gaagugu   auga            GGUAUUGGCGUG CUCAAUU gaa  acaugguu     g
              |||||||   ||||            |||||||||||| ||||||| |||  ||||||||      
              cuucacg   uACU            CUAUAACUGCGC GAGUUaa uuu  uguaccga     a
cuacuucuaccuuu       uuc    ------------            C       u   aa        ccaaa 

Annotation confidence High

Genome context

chr12: 8432426-8432558 [+]

Mature gma-miR171m-5p

• Accession: MIMAT0054317
• Description: Glycine max gma-miR171m-5p mature miRNA
• Sequence: 26 - AGGUAUUGGCGUGCCUCAAUU - 46
• Evidence: experimental ; unknown

Mature gma-miR171m-3p

• Accession: MIMAT0023200
• Description: Glycine max gma-miR171m-3p mature miRNA
• Sequence: 88 - UUGAGCCGCGUCAAUAUCUCA - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553