Stem-loop gma-MIR319n

Accession

MI0019752

Description

Glycine max gma-MIR319n precursor miRNA

Literature search

17 open access papers mention gma-MIR319n
(43 sentences)

Sequence

64501 reads, 135.0 reads per million, 171 experiments

ugugaaagcugcagaaauagGAGUUCCCUUGCAGCCCAAAACacccugcaugaacuucauguuguUUUGGACCGAAGGGAGCCCCUucuucuucac
.........((.((((..(((.((((((((.(.(.((((((((....((((((...)))))))))))))).).))))))))).)))..)))).)).

Structure

ugugaaagc  c    au   A        G A C        cccu      a 
         ug agaa  agG GUUCCCUU C G CCAAAACa    gcauga  
         || ||||  ||| |||||||| | | ||||||||    |||||| c
         ac ucuu  UCC CGAGGGAA G C GGUUUugu    uguacu  
--------c  u    cu   C        - C A        ----      u 

Annotation confidence High

Genome context

chr13: 28262485-28262580 [-]

Mature gma-miR319n-5p

• Accession: MIMAT0054322
• Description: Glycine max gma-miR319n-5p mature miRNA
• Sequence: 21 - GAGUUCCCUUGCAGCCCAAAAC - 42
• Evidence: experimental ; unknown

Mature gma-miR319n-3p

• Accession: MIMAT0023207
• Description: Glycine max gma-miR319n-3p mature miRNA
• Sequence: 66 - UUUGGACCGAAGGGAGCCCCU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553