Stem-loop gma-MIR171p

Accession

MI0019753

Description

Glycine max gma-MIR171p precursor miRNA

Literature search

16 open access papers mention gma-MIR171p
(52 sentences)

Sequence

91915 reads, 546.0 reads per million, 172 experiments

gaagugcuauauuauacuaauuagcacaugacaaauuaAGGUAUUGCCGUGCCUCAAUCugaauacaugacuauuauaacaaaaucagccauguacuuugaUUGAGCCGCGUCAAUAUCUUAuuuugcacuu
...((((((............)))))).((.((((.((((((((((.((((.(((((((.((.((((((.(((((.......))).)).)))))).)).))))))).)))).)))))))))).))))))...

Structure

gaagugcuauauuauacuaauuagcaca  a    u          C    C       u  a      a  -   au 
                            ug caaa uaAGGUAUUG CGUG CUCAAUC ga uacaug cu auu  a
                            || |||| |||||||||| |||| ||||||| || |||||| || |||  a
                            ac guuu AUUCUAUAAC GCGC GAGUUag uu auguac ga uaa  c
-------------------------uuc  -    u          U    C       u  c      c  c   aa 

Annotation confidence High

Genome context

chr13: 40504444-40504575 [-]

Mature gma-miR171p-5p

• Accession: MIMAT0054323
• Description: Glycine max gma-miR171p-5p mature miRNA
• Sequence: 39 - AGGUAUUGCCGUGCCUCAAUC - 59
• Evidence: experimental ; unknown

Mature gma-miR171p-3p

• Accession: MIMAT0023208
• Description: Glycine max gma-miR171p-3p mature miRNA
• Sequence: 102 - UUGAGCCGCGUCAAUAUCUUA - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553