Stem-loop gma-MIR530e

Accession

MI0019754

Description

Glycine max gma-MIR530e precursor miRNA

Literature search

3 open access papers mention gma-MIR530e
(4 sentences)

Sequence

uugaugccgauauguugccuuuaucUGCAUUUGCACCUGCACUUUAaguacucaguuucucugugacauauaaauaauauaacuaugucaguugaggacugaagagaucaauauauuauuauauaauaugggaauagagggaccgagaacgaggugcaggugcaucugcaggugaaugccauauuggauuauuggcc
.((((.((((((((..((.((((((((((..((((((((((((((..((.(((.((((((((((..(((((.(((((((((......((((((...)))))).........))))))))).....)))))...)))))))))).))).))))))))))))))))..)))))))))).))))))))))))))......

Structure

-----u    g        uu  c          UU              Aa  a   a          -ga     ----a         ---acuaug      g 
      ugau ccgauaug  gc uuuaucUGCA  UGCACCUGCACUUU  gu cuc guuucucugu   cauau     aauaauaua         ucaguu  
      |||| ||||||||  || ||||||||||  ||||||||||||||  || ||| ||||||||||   |||||     |||||||||         |||||| a
      auua gguuauac  cg aaguggacgu  acguggacguggag  ca gag cagggagaua   guaua     uuauuauau         agucag  
ccgguu    -        --  u          cu              --  a   c          agg     auaua         aacuagaga      g 

Annotation confidence Not enough data

Genome context

chr13: 41764574-41764770 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR530e

Mature gma-miR530e

• Accession: MIMAT0023209
• Description: Glycine max gma-miR530e mature miRNA
• Sequence: 26 - UGCAUUUGCACCUGCACUUUA - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553