Stem-loop gma-MIR399b

Accession

MI0019758

Description

Glycine max gma-MIR399b precursor miRNA

Literature search

14 open access papers mention gma-MIR399b
(91 sentences)

Sequence

95874 reads, 228.0 reads per million, 176 experiments

caaaucagcaauaGGGCACCUCUCUCCUGGCAGGuauuuuuggagcuaccaaaaaucaaugucaauaacuUGCCAAAGGAGAGUUGCCCUGuggcugguuu
.((((((((.((((((((.((((((..((((((((((((((((.....))))))))...........))))))))..)))))).)))))))).))))))))

Structure

c        a        C      CC        -----------        a 
 aaaucagc auaGGGCA CUCUCU  UGGCAGGu           auuuuugg g
 |||||||| |||||||| ||||||  ||||||||           |||||||| c
 uuuggucg uGUCCCGU GAGAGG  ACCGUuca           uaaaaacc u
-        g        U      AA        auaacuguaac        a 

Annotation confidence High

Genome context

chr16: 36115809-36115909 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR399b

Mature gma-miR399b-5p

• Accession: MIMAT0054327
• Description: Glycine max gma-miR399b-5p mature miRNA
• Sequence: 14 - GGGCACCUCUCUCCUGGCAGG - 34
• Evidence: experimental ; unknown

Mature gma-miR399b-3p

• Accession: MIMAT0023213
• Description: Glycine max gma-miR399b-3p mature miRNA
• Sequence: 71 - UGCCAAAGGAGAGUUGCCCUG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553