Stem-loop gma-MIR396j

Accession

MI0019759

Description

Glycine max gma-MIR396j precursor miRNA

Literature search

26 open access papers mention gma-MIR396j
(148 sentences)

Sequence

81029 reads, 248.0 reads per million, 176 experiments

gguuuucgugaucUUCCACAGUUUUCUUGAACUGcauguguguugugaggcuucuccagugaagguuuaucuccuaugcaagugcagauauucuaugagcacaAUUCAAGAUAGCUGUGGAAAAucacugagau
.(((((.(((((.((((((((((.(((((((.((((((.(.(..(((((.((((......)))).)))))..)))))))).((((..(((...)))..))))..))))))).)))))))))).))))).)))))

Structure

g     c     c          U       -----------------------C      u u uu     g    uc 
 guuuu gugau UUCCACAGUU UCUUGAA                        UGcaug g g  gugag cuuc  c
 ||||| ||||| |||||||||| |||||||                        |||||| | |  ||||| ||||   
 uagag cacuA AAGGUGUCGA AGAACUU                        acguau c c  uauuu gaag  a
-     u     A          U       Aacacgaguaucuuauagacguga      - - uc     g    ug 

Annotation confidence High

Genome context

chr16: 31530670-31530803 [-]

Mature gma-miR396j-5p

• Accession: MIMAT0054328
• Description: Glycine max gma-miR396j-5p mature miRNA
• Sequence: 14 - UUCCACAGUUUUCUUGAACUG - 34
• Evidence: experimental ; unknown

Mature gma-miR396j-3p

• Accession: MIMAT0023214
• Description: Glycine max gma-miR396j-3p mature miRNA
• Sequence: 104 - AUUCAAGAUAGCUGUGGAAAA - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553