Stem-loop gma-MIR171q

Accession

MI0019760

Description

Glycine max gma-MIR171q precursor miRNA

Literature search

15 open access papers mention gma-MIR171q
(36 sentences)

Sequence

149560 reads, 750.0 reads per million, 178 experiments

ugagaacuugAGAUAUUGGUGCGGUUCAAUCagaaggcaguguuuuaugauccaaaaacucuguguuauuugaUUGAGCCGUGCCAAUAUCACAuguaauucaucucgg
(((((((.((.((((((((((((((((((((((((.((((.(((((........))))).)))).)..))))))))))))))))))))))).)).))......))))).

Structure

-     ------  u  A                       -- g    u     aug 
 ugaga      ac ug GAUAUUGGUGCGGUUCAAUCaga  a gcag guuuu   a
 |||||      || || |||||||||||||||||||||||  | |||| |||||    
 gcucu      ug AC CUAUAACCGUGCCGAGUUaguuu  u uguc caaaa   u
g     acuuaa  u  A                       au g    u     acc 

Annotation confidence High

Genome context

chr17: 1001169-1001277 [+]

Mature gma-miR171q-5p

• Accession: MIMAT0054329
• Description: Glycine max gma-miR171q-5p mature miRNA
• Sequence: 11 - AGAUAUUGGUGCGGUUCAAUC - 31
• Evidence: experimental ; unknown

Mature gma-miR171q-3p

• Accession: MIMAT0023215
• Description: Glycine max gma-miR171q-3p mature miRNA
• Sequence: 74 - UUGAGCCGUGCCAAUAUCACA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553