Stem-loop gma-MIR2111b

Accession

MI0019765

Description

Glycine max gma-MIR2111b precursor miRNA

Literature search

8 open access papers mention gma-MIR2111b
(33 sentences)

Sequence

134428 reads, 192.0 reads per million, 165 experiments

uaggaucaggUAAUCUGCAUCCUGAGGUUUAgaaacaauauguuuaucgggucuaAUCCUUGGGAUGUAGAUUACCacguccuu
.(((((..(((((((((((((((((((.(((((..(.(((....))).)..))))).)))))))))))))))))))..))))).

Structure

u     ca                   U     aa a   u 
 aggau  ggUAAUCUGCAUCCUGAGG UUAga  c aua g
 |||||  ||||||||||||||||||| |||||  | |||  
 uccug  CCAUUAGAUGUAGGGUUCC Aaucu  g uau u
u     ca                   U     gg c   u 

Annotation confidence High

Genome context

chr18: 45662001-45662084 [-]

Mature gma-miR2111b-5p

• Accession: MIMAT0023220
• Description: Glycine max gma-miR2111b-5p mature miRNA
• Sequence: 11 - UAAUCUGCAUCCUGAGGUUUA - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR2111b-3p

• Accession: MIMAT0054332
• Description: Glycine max gma-miR2111b-3p mature miRNA
• Sequence: 56 - AUCCUUGGGAUGUAGAUUACC - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553