Stem-loop gma-MIR5786

Accession

MI0019767

Description

Glycine max gma-MIR5786 precursor miRNA

Literature search

1 open access papers mention gma-MIR5786
(1 sentences)

Sequence

45684 reads, 64.0 reads per million, 157 experiments

gagagagucuUGUCGCAGGAUAGAGGGCACUggguauggcaugaugaugcaugcaaaaauauauuaugugugcugaaaucauaauuaagcauguauuuauaaauauagcuaGUGUCCCUGUCUUGCGACAAGauucucug
.((((((((((((((((((((((.(((((((((.((((.......(((((((((........((((((.((......))))))))...)))))))))......)))).))))))))))))))))))))))))))))))).

Structure

g                      A         g    gcaugau         aaaaauau      u  gc 
 agagagucuUGUCGCAGGAUAG GGGCACUgg uaug       gaugcaugc        auuaug gu  u
 |||||||||||||||||||||| ||||||||| ||||       |||||||||        |||||| ||   
 ucucuuaGAACAGCGUUCUGUC CCUGUGauc auau       uuauguacg        uaauac ua  g
g                      -         g    -aaauau         -----aau      -  aa 

Annotation confidence High

Genome context

chr19: 1947621-1947760 [+]

Mature gma-miR5786-5p

• Accession: MIMAT0023222
• Description: Glycine max gma-miR5786-5p mature miRNA
• Sequence: 11 - UGUCGCAGGAUAGAGGGCACU - 31
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR5786-3p

• Accession: MIMAT0054334
• Description: Glycine max gma-miR5786-3p mature miRNA
• Sequence: 112 - GUGUCCCUGUCUUGCGACAAG - 132
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153