Stem-loop gma-MIR2111d

Accession

MI0019769

Description

Glycine max gma-MIR2111d precursor miRNA

Literature search

6 open access papers mention gma-MIR2111d
(29 sentences)

Sequence

126645 reads, 200.0 reads per million, 177 experiments

gaaugauugcuggguccggauuaggUAAUCUGCAUCCUGAGGUUUAggacaauauccuuuguuuuguuucuaGUCCUUGGGAUGCAGAUUACGucuuccuugccagcacuguacaaca
.......((((((....(((..(.((((((((((((((((((.(((((((((...........))).)))))).)))))))))))))))))).)..)))...))))))..........

Structure

---gaaugau      gucc   uu g                  U      -   uauc 
          ugcugg    gga  a gUAAUCUGCAUCCUGAGG UUAgga caa    c
          ||||||    |||  | |||||||||||||||||| |||||| |||    u
          acgacc    ccu  u CAUUAGACGUAGGGUUCC Gaucuu guu    u
acaacauguc      -guu   uc G                  U      u   uugu 

Annotation confidence High

Genome context

Unknown

Mature gma-miR2111d-5p

• Accession: MIMAT0054336
• Description: Glycine max gma-miR2111d-5p mature miRNA
• Sequence: 26 - UAAUCUGCAUCCUGAGGUUUA - 46
• Evidence: experimental ; unknown

Mature gma-miR2111d-3p

• Accession: MIMAT0023224
• Description: Glycine max gma-miR2111d-3p mature miRNA
• Sequence: 73 - GUCCUUGGGAUGCAGAUUACG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553