Stem-loop gma-MIR2606a

Accession

MI0019771

Description

Glycine max gma-MIR2606a precursor miRNA

Literature search

1 open access papers mention gma-MIR2606a
(1 sentences)

Sequence

5263 reads, 47.0 reads per million, 156 experiments

aaagcuuauauacaguuCCUUAGGUUCUUUUGGUGCUCUucuucaucaauuagaaucgaaguuucaccuugauaaucucuuaauaaagguuugcauuaaagaucaacauaaauuaccgaguugaaauuccaauuuugauugaagaauagcaccAAAAGCACUUAAGGAACGGUAucuaaguuuc
.(((((((.((((.(((((((((((.(((((((((((.(((((((...((((((((.(.(((((((.((((.((((...(((.....(((((.......)))))....))))))).)))).))))))).).))))))))))))))).))))))))))).))))))))))).)))).))))))).

Structure

a       u    a           U           C       uca        c a       c    a    cuc   auaaa     gc 
 aagcuua auac guuCCUUAGGU CUUUUGGUGCU Uucuuca   auuagaau g aguuuca cuug uaau   uua     gguuu  a
 ||||||| |||| ||||||||||| ||||||||||| |||||||   |||||||| | ||||||| |||| ||||   |||     |||||  u
 uuugaau uAUG CAAGGAAUUCA GAAAAccacga aagaagu   uaguuuua c uuaaagu gagc auua   aau     cuaga  u
c       c    G           C           u       ---        a c       u    c    ---   -acaa     aa 

Annotation confidence Low

Genome context

chr20: 34012454-34012637 [+]

Mature gma-miR2606a-5p

• Accession: MIMAT0054338
• Description: Glycine max gma-miR2606a-5p mature miRNA
• Sequence: 18 - CCUUAGGUUCUUUUGGUGCUCU - 39
• Evidence: experimental ; unknown

Mature gma-miR2606a-3p

• Accession: MIMAT0023226
• Description: Glycine max gma-miR2606a-3p mature miRNA
• Sequence: 154 - AAAAGCACUUAAGGAACGGUA - 174
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553