Stem-loop gma-MIR171r

Accession

MI0019774

Description

Glycine max gma-MIR171r precursor miRNA

Literature search

15 open access papers mention gma-MIR171r
(36 sentences)

Sequence

116943 reads, 194.0 reads per million, 148 experiments

gaaguggacuggcGUGGUAUUGCUUCUGCUCAUCUuugcauaugaauuucaucacaucccuuuaaauaagaCGAGCCGAAUCAAUACCACUCcaguacacuu
.(((((.(((((.(((((((((.(((.((((.((((...............................)))).)))).))).))))))))).))))).)))))

Structure

g     g     c         C   U    A    ugcauaugaauuuc 
 aagug acugg GUGGUAUUG UUC GCUC UCUu              a
 ||||| ||||| ||||||||| ||| |||| ||||              u
 uucac ugacC CACCAUAAC AAG CGAG agaa              c
-     a     U         U   C    C    uaaauuucccuaca 

Annotation confidence High

Genome context

chr4: 50116148-50116249 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR171r

Mature gma-miR171r-5p

• Accession: MIMAT0054341
• Description: Glycine max gma-miR171r-5p mature miRNA
• Sequence: 14 - GUGGUAUUGCUUCUGCUCAUCU - 35
• Evidence: experimental ; unknown

Mature gma-miR171r-3p

• Accession: MIMAT0023229
• Description: Glycine max gma-miR171r-3p mature miRNA
• Sequence: 72 - CGAGCCGAAUCAAUACCACUC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553