Stem-loop gma-MIR399d

Accession

MI0019776

Description

Glycine max gma-MIR399d precursor miRNA

Literature search

15 open access papers mention gma-MIR399d
(94 sentences)

Sequence

11082 reads, 104.0 reads per million, 162 experiments

ugggugcauuacaGGGCAAGUUCUCUUUGGCAGGuaccaacaagcuaugcaauacuauaugugugugcaaucUGCCAAAGGAGAUUUGCCCAGcaauucuccu
.(((.(.(((.(.(((((((((.((((((((((((............((((((((.....)))).)))))))))))))))).))))))))).).))).).)))

Structure

u   u c   a a         C            accaacaagcua    -    u 
 ggg g auu c GGGCAAGUU UCUUUGGCAGGu            ugca auac a
 ||| | ||| | ||||||||| ||||||||||||            |||| |||| u
 ucc c uaa G CCCGUUUAG GGAAACCGUcua            acgu ugug a
-   u u   c A         A            ------------    g    u 

Annotation confidence High

Genome context

chr5: 35229349-35229451 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR399d

Mature gma-miR399d-5p

• Accession: MIMAT0054343
• Description: Glycine max gma-miR399d-5p mature miRNA
• Sequence: 14 - GGGCAAGUUCUCUUUGGCAGG - 34
• Evidence: experimental ; unknown

Mature gma-miR399d-3p

• Accession: MIMAT0023231
• Description: Glycine max gma-miR399d-3p mature miRNA
• Sequence: 73 - UGCCAAAGGAGAUUUGCCCAG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553