Stem-loop gma-MIR171s

Accession

MI0019779

Description

Glycine max gma-MIR171s precursor miRNA

Literature search

15 open access papers mention gma-MIR171s
(36 sentences)

Sequence

237985 reads, 346.0 reads per million, 171 experiments

gaaguggacuggcGUGGUAUUGCUUCUGUUCAUcuuugcauaugaauuuaaucacauccucuuaaauaagaCGAGCCGAAUCAAUACCACUCuaguacacuu
.(((((.(((((.(((((((((.(((.((((.((((...............................)))).)))).))).))))))))).))))).)))))

Structure

g     g     c         C   U    A    ugcauaugaauuua 
 aagug acugg GUGGUAUUG UUC GUUC Ucuu              a
 ||||| ||||| ||||||||| ||| |||| ||||              u
 uucac ugauC CACCAUAAC AAG CGAG agaa              c
-     a     U         U   C    C    uaaauucuccuaca 

Annotation confidence High

Genome context

chr6: 10887673-10887774 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR171s

Mature gma-miR171s-5p

• Accession: MIMAT0054346
• Description: Glycine max gma-miR171s-5p mature miRNA
• Sequence: 14 - GUGGUAUUGCUUCUGUUCAU - 33
• Evidence: experimental ; unknown

Mature gma-miR171s-3p

• Accession: MIMAT0023234
• Description: Glycine max gma-miR171s-3p mature miRNA
• Sequence: 72 - CGAGCCGAAUCAAUACCACUC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553