Stem-loop gma-MIR394f

Accession

MI0019784

Description

Glycine max gma-MIR394f precursor miRNA

Literature search

8 open access papers mention gma-MIR394f
(12 sentences)

Sequence

177505 reads, 415.0 reads per million, 160 experiments

cguagccauuUUGGCAUUCUGUCCACCUCCacuaauauuaaauggugacaguuggAGGUGGCCAGUAGGCCAAACGGgcucugu
((.((((..((((((...(((.(((((((((((..((((....))))..)).))))))))).)))...))))))..)))).)).

Structure

-  u    au      AUU   U         -  aa    a 
 cg agcc  uUUGGC   CUG CCACCUCCa cu  uauu a
 || ||||  ||||||   ||| ||||||||| ||  ||||  
 gu ucgG  AAACCG   GAC GGUGGAggu ga  gugg a
u  c    GC      GAU   C         u  ca    u 

Annotation confidence High

Genome context

chr8: 9871233-9871316 [+]

Mature gma-miR394f-5p

• Accession: MIMAT0023239
• Description: Glycine max gma-miR394f-5p mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: experimental ; Illumina [1]

Mature gma-miR394f-3p

• Accession: MIMAT0054351
• Description: Glycine max gma-miR394f-3p mature miRNA
• Sequence: 56 - AGGUGGCCAGUAGGCCAAACGG - 77
• Evidence: experimental ; unknown

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553