Stem-loop gma-MIR171u

Accession

MI0019785

Description

Glycine max gma-MIR171u precursor miRNA

Literature search

15 open access papers mention gma-MIR171u
(36 sentences)

Sequence

88835 reads, 453.0 reads per million, 178 experiments

uguggggaUGUUGGAACAGUUCAAUCAAAucaaauuuccuaaugauugggugaugguuggauucuuugauaUGAUUGAGCCGUGCCAAUAUCaauuccuacu
.(((((((((((((.((.(((((((((.((((((..(((.(((.(((....))).))))))...)))))).))))))))).)).))))))))....))))).

Structure

u     ----        A  A         A      -uu   u   g   g 
 guggg    gaUGUUGG AC GUUCAAUCA Aucaaa   ucc aau auu g
 |||||    |||||||| || ||||||||| ||||||   ||| ||| |||  
 caucc    CUAUAACC UG CGAGUUAGU uaguuu   agg uug uag g
u     uuaa        G  C         a      cuu   -   g   u 

Annotation confidence High

Genome context

chr8: 923816-923917 [-]

Mature gma-miR171u-5p

• Accession: MIMAT0054352
• Description: Glycine max gma-miR171u-5p mature miRNA
• Sequence: 9 - UGUUGGAACAGUUCAAUCAAA - 29
• Evidence: experimental ; unknown

Mature gma-miR171u-3p

• Accession: MIMAT0023240
• Description: Glycine max gma-miR171u-3p mature miRNA
• Sequence: 72 - UGAUUGAGCCGUGCCAAUAUC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553