Stem-loop gma-MIR399f

Accession

MI0019786

Description

Glycine max gma-MIR399f precursor miRNA

Literature search

14 open access papers mention gma-MIR399f
(88 sentences)

Sequence

11132 reads, 101.0 reads per million, 168 experiments

ugggugcauuacaGGGCAAGUUCUCUUUGGCAGGuaucaagaagcuauuaaugcuauacaaguguacgugugcaaccUGCCAAAGGAGAUUUGCCCAGcaauucuccu
.(((.(.(((.(.(((((((((.((((((((((((................(((.((((........))))))))))))))))))).))))))))).).))).).)))

Structure

u   u c   a a         C            aucaagaagcuauuaa   u    aag 
 ggg g auu c GGGCAAGUU UCUUUGGCAGGu                ugc auac   u
 ||| | ||| | ||||||||| ||||||||||||                ||| ||||    
 ucc c uaa G CCCGUUUAG GGAAACCGUcca                acg ugug   g
-   u u   c A         A            ----------------   -    cau 

Annotation confidence High

Genome context

chr8: 9110335-9110442 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR399f

Mature gma-miR399f-5p

• Accession: MIMAT0054353
• Description: Glycine max gma-miR399f-5p mature miRNA
• Sequence: 14 - GGGCAAGUUCUCUUUGGCAGG - 34
• Evidence: experimental ; unknown

Mature gma-miR399f-3p

• Accession: MIMAT0023241
• Description: Glycine max gma-miR399f-3p mature miRNA
• Sequence: 78 - UGCCAAAGGAGAUUUGCCCAG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553