miRBase entry: gma-MIR399f

Stem-loop gma-MIR399f


Accession
MI0019786
Description
Glycine max gma-MIR399f precursor miRNA

Literature search
14 open access papers mention gma-MIR399f
(87 sentences)

Sequence


ugggugcauuacagggcaaguucucuuuggcagguaucaagaagcuauuaaugcuauacaaguguacgugugcaaccUGCCAAAGGAGAUUUGCCCAGcaauucuccu
.(((.(.(((.(.(((((((((.((((((((((((................(((.((((........))))))))))))))))))).))))))))).).))).).)))

Structure
u   u c   a a         c            aucaagaagcuauuaa   u    aag 
 ggg g auu c gggcaaguu ucuuuggcaggu                ugc auac   u
 ||| | ||| | ||||||||| ||||||||||||                ||| ||||    
 ucc c uaa G CCCGUUUAG GGAAACCGUcca                acg ugug   g
-   u u   c A         A            ----------------   -    cau 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr8: 9110335-9110442 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR399f
Name Accession Chromosome Start End Strand Confidence




Database links


References

  1. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553