Stem-loop gma-MIR2606b

Accession

MI0019795

Description

Glycine max gma-MIR2606b precursor miRNA

Literature search

1 open access papers mention gma-MIR2606b
(2 sentences)

Sequence

996 reads, 36.0 reads per million, 149 experiments

aaagcuuauauacaguuCCUUAGGUUCUUUGGUGCUCUUcuucaucaauuagaaucgaaguuucaccucaauaaucucuuaauaaagguuugcauuaaagaucaacauaaauuaccgaguugaaauuccaauuuugauugaagaauagcaccAAAAGCACUUAAGGAACGGUAucuaaguuuc
.(((((((.((((.(((((((((((.((((((((((.(((((((...((((((((.(.(((((((.(((..((((...(((.....(((((.......)))))....)))))))..))).))))))).).))))))))))))))).)))))).)))).))))))))))).)))).))))))).

Structure

a       u    a           U    -      C       uca        c a       c   aa    cuc   auaaa     gc 
 aagcuua auac guuCCUUAGGU CUUU GGUGCU UUcuuca   auuagaau g aguuuca cuc  uaau   uua     gguuu  a
 ||||||| |||| ||||||||||| |||| |||||| |||||||   |||||||| | ||||||| |||  ||||   |||     |||||  u
 uuugaau uAUG CAAGGAAUUCA GAAA ccacga aagaagu   uaguuuua c uuaaagu gag  auua   aau     cuaga  u
c       c    G           C    A      u       ---        a c       u   cc    ---   -acaa     aa 

Annotation confidence Medium

Genome context

KQ474241.1: 6816-6998 [-]

Mature gma-miR2606b-5p

• Accession: MIMAT0054361
• Description: Glycine max gma-miR2606b-5p mature miRNA
• Sequence: 18 - CCUUAGGUUCUUUGGUGCUCUU - 39
• Evidence: experimental ; unknown

Mature gma-miR2606b-3p

• Accession: MIMAT0023250
• Description: Glycine max gma-miR2606b-3p mature miRNA
• Sequence: 153 - AAAAGCACUUAAGGAACGGUA - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553