Stem-loop osa-MIR5788

Accession

MI0019798

Description

Oryza sativa osa-MIR5788 precursor miRNA

Literature search

5 open access papers mention osa-MIR5788
(10 sentences)

Sequence

492 reads, 367 reads per million, 2 experiments

aaaaaaacgauucuagaacUGGAUGUGACAUACUCUAGUAcaaugaaucuggauagagguauauccagauucguaguacuaggauaugucacauccaguacuagauugauuuuuuu
(((((((((((.((((.(((((((((((((((.((((((((.(((((((((((((......))))))))))))).)))))))).))))))))))))))).)))))))).)))))))

Structure

       -    u    a               C        a             ga 
aaaaaaa cgau cuag acUGGAUGUGACAUA UCUAGUAc augaaucuggaua  g
||||||| |||| |||| ||||||||||||||| |||||||| |||||||||||||   
uuuuuuu guua gauc ugaccuacacuguau ggaucaug ugcuuagaccuau  g
       a    -    a               a        a             au 

Annotation confidence Not enough data

Genome context

Chr3: 30006944-30007059 [+]

Mature osa-miR5788

• Accession: MIMAT0023253
• Description: Oryza sativa osa-miR5788 mature miRNA
• Sequence: 20 - UGGAUGUGACAUACUCUAGUA - 40
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207