Dead hairpin entry

Stem-loop osa-MIR812v

Accession

MI0019823

Description

Oryza sativa osa-MIR812v precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

9 open access papers mention osa-MIR812v
(15 sentences)

Sequence

51818 reads, 176.0 reads per million, 142 experiments

acugcauccuccguuccaauuuuagugaaaccauaaguuuccgugcuuaauuuuaacuguuuauuuuauuuaaauuuuuuuuauaauuaguAUUUUUGUUGUUAUGAGAUGAUAAaacauaaguauuacuuuaugcgugacuuauguuuuuauuuuuuuucaaauaaaaaggacgauuaaaguuagauauaaaaacucAUGGCUGCACUUAAAAUGGGACGGagagaguacu
..(((.((((((((((((.(((.((((...((((.(((((..(((.((((((((((.(((((.((((((((.......(((((((((.............)))))))))....(((((((((((..(((.......))))))))))))))...........)))))))).))))).)))))))))).)))..))))).))))...)))).))).)))))))))).)))))..

Structure

ac   a  -          a   u    aaa    a     cc   c          c     a        ---------------------------------------------aaauuuu         uaguA 
  ugc uc cuccguucca uuu agug   ccau aguuu  gug uuaauuuuaa uguuu uuuuauuu                                                    uuuuauaau     U
  ||| || |||||||||| ||| ||||   |||| |||||  ||| |||||||||| ||||| ||||||||                                                    |||||||||     U
  aug ag gaGGCAGGGU AAA UCAC   GGUA ucaaa  uau gauugaaauu gcagg aaaauaaa                                                    AGAGUAUUG     U
uc   -  a          A   U    GUC    c     aa   a          a     a        cuuuuuuuuauuuuuguauucagugcguauuucauuaugaauacaaAAUAGU         UUGUU