Stem-loop osa-MIR5809

Accession

MI0019826

Description

Oryza sativa osa-MIR5809 precursor miRNA

Literature search

2 open access papers mention osa-MIR5809
(2 sentences)

Sequence

7 reads, 5 reads per million, 2 experiments

guaaacgcugguagcagcggcgacgagaauagauggcgUCGUCGCCGGCGACCACAGCacaac
......((((....(..(((((((((............)))))))))..)....)))).....

Structure

guaaac    guag ag         gaaua 
      gcug    c  cggcgacga     g
      ||||    |  |||||||||      
      CGAC    G  GCCGCUGCU     a
-caaca    ACCA CG         gcggu 

Annotation confidence Not enough data

Genome context

Chr4: 23527607-23527669 [-]

Mature osa-miR5809

• Accession: MIMAT0023281
• Description: Oryza sativa osa-miR5809 mature miRNA
• Sequence: 39 - UCGUCGCCGGCGACCACAGC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207