Stem-loop osa-MIR5813

Accession

MI0019830

Description

Oryza sativa osa-MIR5813 precursor miRNA

Sequence

28 reads, 19 reads per million, 2 experiments

uggugagcuaauuuucaugaccaggucacugcuugccuuugcaguaccauuauggguuaccgugccagauugagggaaggaaugaaaaggguaaagcaaaggcAAGCAGCGACUCUGGUCAUGGAauuggagcca
((((...(((((((.((((((((((((.((((((((((((((..((((.......(((.((.(.((.......)).).)))))......))))..)))))))))))))).))).)))))))))))))))).))))

Structure

    gag       u         -   a              ag    auuaugg   a  g g  ag 
uggu   cuaauuu caugaccag guc cugcuugccuuugc  uacc       guu cc u cc  a
||||   ||||||| ||||||||| ||| ||||||||||||||  ||||       ||| || | ||  u
accg   gguuaAG GUACUGGUC CAG GACGAAcggaaacg  augg       uaa gg a gg  u
    --a       -         U   C              aa    -gaaaag   -  a g  ag 

Annotation confidence Not enough data

Genome context

Chr4: 9952990-9953124 [-]

Mature osa-miR5813

• Accession: MIMAT0023285
• Description: Oryza sativa osa-miR5813 mature miRNA
• Sequence: 104 - AAGCAGCGACUCUGGUCAUGGA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207