Stem-loop osa-MIR5816

Accession

MI0019833

Description

Oryza sativa osa-MIR5816 precursor miRNA

Sequence

18 reads, 12 reads per million, 2 experiments

ucUAGGAGUGUUUGUAGGAGCGCCACgugaaaauguaggagcguauauaggaaguuuaauagacuuuuaguauauaauagauuucuaggauuucucuaauuuauuugagagucacguagcguuguaaaagcauuuguaga
((((.((((((((...(.(((((.((((((...(.(((((((((((((.((((((((...)))))))).))))))....).)))))).)..(((((..........))))))))))).))))).)..)))))))).))))

Structure

    G        GUA G     C      -------------------aaa g      - ----      a        a 
ucUA GAGUGUUU   G AGCGC ACguga                      u uaggag c    guauau ggaaguuu  
|||| ||||||||   | ||||| ||||||                      | |||||| |    |||||| |||||||| a
agau uuuacgaa   u uugcg ugcacu                      g aucuuu g    uauaug uuuucaga  
    g        -aa g     a      gagaguuuauuuaaucucuuua g      a auaa      a        u 

Annotation confidence Not enough data

Genome context

Chr9: 11583948-11584087 [-]

Mature osa-miR5816

• Accession: MIMAT0023288
• Description: Oryza sativa osa-miR5816 mature miRNA
• Sequence: 3 - UAGGAGUGUUUGUAGGAGCGCCAC - 26
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207