Stem-loop osa-MIR5822

Accession

MI0019840

Description

Oryza sativa osa-MIR5822 precursor miRNA

Literature search

1 open access papers mention osa-MIR5822
(1 sentences)

Sequence

gccccuuugcuagcuagcugagcaacagcccaaaaacaaggaugucuuggggacucauaugcacagcagcaugaguaaaauguugcaccuugggagugagaggcauuugcaauccaauauaauuaagcaugugaggcauccggaauucaguuuugucaauaugcauaccuugaucacUGUCUGCUCGAUGUCAGGUUGcgugaggggu
((((((((((.(.((.(((((((((((((((((..(((....))).)))))..(((((((((...(((((((.......)))))))...(((.(((((.....))))).)))..............)))))))))((((.((((((...)))))).....))))............)))).))))))..)).)).).))).)))))))

Structure

       -   u g  a  --      -    ----------------cccaaaaacaaggaugucuugggga         acagcagcaugaguaaaauguugcaccuugg 
gccccuu ugc a cu gc  ugagca acag                                         cucauaugc                               g
||||||| ||| | || ||  |||||| ||||                                         |||||||||                                
uggggag gcG U GA UG  GCUCGU UGUc                                         gaguguacg                               a
       u   U G  C  UA      C    acuaguuccauacguauaacuguuuugacuuaaggccuacg         aauuaauauaaccuaacguuuacggagagug 

Annotation confidence Not enough data

Genome context

Chr11: 26335769-26335976 [+]

Mature osa-miR5822

• Accession: MIMAT0023295
• Description: Oryza sativa osa-miR5822 mature miRNA
• Sequence: 178 - UGUCUGCUCGAUGUCAGGUUG - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207