Stem-loop osa-MIR5837

Accession

MI0019858

Description

Oryza sativa osa-MIR5837 precursor miRNA

Sequence

gaauuggaagGGUGAUGUGGAGCGUUCGGCAAUGUUGGAAUGACAUGCAGCUucgaagacauucuugaugcuuuccaagccuauagcuguacagagauggagggaucucaugcaguuuucuuagaaaguuugaugcauugugucucacucugaucaauggcuuagcguuuuguaugcgccuuuuaccuuguc
......((((((((((((((((((((.(((...((((((.(((.(((((((.((((.............((((((.(((.....(((((((..(((((......))))).)))))))..))).)))))))))).))..))))).))).)))))).....))).)))))))))))).))))))))........

Structure

--gaauug        -            C   --AAU      A   C     --  U    agacauucuugau      c   ccuau       ca     gg 
        gaagGGUG AUGUGGAGCGUU GGC     GUUGGA UGA AUGCA  GC ucga             gcuuuc aag     agcugua  gagau  a
        |||||||| |||||||||||| |||     |||||| ||| |||||  || ||||             |||||| |||     |||||||  |||||   
        uuuuccgc uauguuuugcga ucg     uagucu acu ugugu  cg aguu             ugaaag uuc     uugacgu  cucua  g
cuguucca        g            u   guaac      c   c     ua  u    -------------      a   ---uu       -a     gg 

Annotation confidence Not enough data

Genome context

Chr11: 24702021-24702212 [-]

Mature osa-miR5837.2

• Accession: MIMAT0023313
• Description: Oryza sativa osa-miR5837.2 mature miRNA
• Sequence: 11 - GGUGAUGUGGAGCGUUCGGCA - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR5837.1

• Accession: MIMAT0023314
• Description: Oryza sativa osa-miR5837.1 mature miRNA
• Sequence: 32 - AUGUUGGAAUGACAUGCAGCU - 52
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207