Stem-loop hco-mir-63a

Accession

MI0019994

Description

Haemonchus contortus hco-mir-63a precursor miRNA

Literature search

1 open access papers mention hco-mir-63a
(1 sentences)

Sequence

1101558 reads, 8439.0 reads per million, 21 experiments

cuuguauucuucugaugaucauACCUGUUCGACGGGAGUCAUCGUccuuaugguacAAUGACACUGUUGCGAACUGGGAUggucaaaggcauucguuccgcaua
...........((..((((((..((.(((((((((..(((((.((((....)).)).))))).))))..))))).))..))))))..))...............

Structure

----cuuguauucuu  ga      uA  U     --    GA     C  -  u 
               cu  ugauca  CC GUUCG  ACGG  GUCAU GU cc u
               ||  ||||||  || |||||  ||||  ||||| || ||  
               gg  acuggU  GG CAAGC  UGUC  CAGUA ca gg a
auacgccuugcuuac  aa      AG  U     GU    -A     A  u  u 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-63a-5p

• Accession: MIMAT0057926
• Description: Haemonchus contortus hco-miR-63a-5p mature miRNA
• Sequence: 23 - ACCUGUUCGACGGGAGUCAUCGU - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-63a-3p

• Accession: MIMAT0023318
• Description: Haemonchus contortus hco-miR-63a-3p mature miRNA
• Sequence: 57 - AAUGACACUGUUGCGAACUGGGAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4