Stem-loop hco-mir-40b

Accession

MI0019999

Description

Haemonchus contortus hco-mir-40b precursor miRNA

Literature search

1 open access papers mention hco-mir-40b
(1 sentences)

Sequence

gucggccgcaucuccagcgguccgcuacaauaccgucguugaagcguucauggucuUCACCGGGUGUCUUGUAGCGGAcaugcugagcgguuauaccacug
...((((((.....((((((((((((((((.((..(((.((((((.......).))))).)))..)).))))))))))).))))).)))))).........

Structure

------guc      aucuc     -           u  cg   u     - gu 
         ggccgc     cagcg guccgcuacaa ac  ucg ugaag c  u
         ||||||     ||||| ||||||||||| ||  ||| ||||| |  c
         uuggcg     gucgu cAGGCGAUGUU UG  GGC ACUuc g  a
gucaccaua      ----a     a           C  UG   C     u gu 

Annotation confidence Low

Genome context

Unknown

Mature hco-miR-40b

• Accession: MIMAT0023323
• Description: Haemonchus contortus hco-miR-40b mature miRNA
• Sequence: 57 - UCACCGGGUGUCUUGUAGCGGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4