Stem-loop hco-mir-40b

Accession

MI0019999

Description

Haemonchus contortus hco-mir-40b precursor miRNA

Literature search

1 open access papers mention hco-mir-40b
(1 sentences)

Sequence

42176 reads, 535.0 reads per million, 21 experiments

gucggccgcaucuccagcggucCGCUACAAUACCGUCGUUGAAGcguucauggucuUCACCGGGUGUCUUGUAGCGGAcaugcugagcgguuauaccacug
...((((((.....((((((((((((((((.((..(((.((((((.......).))))).)))..)).))))))))))).))))).)))))).........

Structure

------guc      aucuc     -           U  CG   U     - gu 
         ggccgc     cagcg gucCGCUACAA AC  UCG UGAAG c  u
         ||||||     ||||| ||||||||||| ||  ||| ||||| |  c
         uuggcg     gucgu cAGGCGAUGUU UG  GGC ACUuc g  a
gucaccaua      ----a     a           C  UG   C     u gu 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-40b-5p

• Accession: MIMAT0057931
• Description: Haemonchus contortus hco-miR-40b-5p mature miRNA
• Sequence: 23 - CGCUACAAUACCGUCGUUGAAG - 44
• Evidence: experimental ; Illumina [1]

Mature hco-miR-40b-3p

• Accession: MIMAT0023323
• Description: Haemonchus contortus hco-miR-40b-3p mature miRNA
• Sequence: 57 - UCACCGGGUGUCUUGUAGCGGA - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4