Stem-loop hco-mir-5893

Accession

MI0020008

Description

Haemonchus contortus hco-mir-5893 precursor miRNA

Sequence

733 reads, 7.0 reads per million, 21 experiments

cuuuuucaugucaucuaucccuCCGGGGUCCGUUAAUUUGUACcaaaggaguacagUACAAAUUUAUGAACUCCGAAGgugggaggacauagccugauua
.......(((((.(((...(((.((((((.(((.(((((((((............))))))))).))).)))))).)))..))).)))))..........

Structure

---cuuuuuc     a   auc   C      C   U         caaag 
          auguc ucu   ccu CGGGGU CGU AAUUUGUAC     g
          ||||| |||   ||| |||||| ||| |||||||||      
          uacag agg   gGA GCCUCA GUA UUAAACAUg     a
auuaguccga     g   -gu   A      A   U         acaug 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-5893-5p

• Accession: MIMAT0057938
• Description: Haemonchus contortus hco-miR-5893-5p mature miRNA
• Sequence: 23 - CCGGGGUCCGUUAAUUUGUAC - 43
• Evidence: experimental ; Illumina [1]

Mature hco-miR-5893-3p

• Accession: MIMAT0023332
• Description: Haemonchus contortus hco-miR-5893-3p mature miRNA
• Sequence: 57 - UACAAAUUUAUGAACUCCGAAG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4