Stem-loop hco-mir-259

Accession

MI0020009

Description

Haemonchus contortus hco-mir-259 precursor miRNA

Sequence

427173 reads, 4113.0 reads per million, 21 experiments

cagcauacugucuucgccgcugUAAUCUCAUCCGAAUCUGUUGCAgaaacgaagcAACGAAUUCGACUGAGAUUGGGgcguugcaagacauaucaugaaa
((..(((.((((((.((((((.((((((((..(((((.((((((.........)))))).)))))..)))))))).))))..)))))))))))..))...

Structure

---  gc   c      c  --    g        UC     C      Aga 
   ca  aua ugucuu gc  cgcu UAAUCUCA  CGAAU UGUUGC   a
   ||  ||| |||||| ||  |||| ||||||||  ||||| ||||||   a
   gu  uau acagaa cg  gcgG GUUAGAGU  GCUUA GCAAcg   c
aaa  ac   -      -  uu    G        CA     A      aag 

Annotation confidence High

Genome context

Unknown

Mature hco-miR-259-5p

• Accession: MIMAT0023333
• Description: Haemonchus contortus hco-miR-259-5p mature miRNA
• Sequence: 23 - UAAUCUCAUCCGAAUCUGUUGCA - 45
• Evidence: experimental ; Illumina [1]

Mature hco-miR-259-3p

• Accession: MIMAT0057939
• Description: Haemonchus contortus hco-miR-259-3p mature miRNA
• Sequence: 56 - AACGAAUUCGACUGAGAUUGGG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4